Archive

2020

January

• January 23, 2020 » Novel 2019 coronavirus genome in Wuhan, China and USA
• January 20, 2020 » Robust Region-Based Rare-Variant Test to UKBB-Seq Data

2019

November

• November 8, 2019 » Genome-wide DNA methylation to human atrial fibrillation

October

• October 30, 2019 » Genome-wide bisulfite sequencing to human tissue samples
• October 28, 2019 » Epigenome Research to Human Cancers with WGBS
• October 28, 2019 » Genomics, Environment Interaction, Epigenetics and Aging
• October 26, 2019 » Population Genetics in East Asian and Allele Frequency
• October 24, 2019 » Genetic and Epigenetic based Intra-Tumor Heterogeneity
• October 12, 2019 » Electronic health/medical records (EHR/EMR) data analysis
• October 8, 2019 » US-FDA Artificial Intelligence and Machine Learning Discussion
• October 7, 2019 » Artificial intelligence in risk prediction and diseases diagnosis
• October 1, 2019 » How to design and conduct a biomedical research in MCRI

August

• August 19, 2019 » Genome-wide cell-free DNA fragmentation in patients with cancer
• August 1, 2019 » (5R)-5-Hydroxytriptolide and Epigenetics of Rheumatoid Arthritis

July

• July 9, 2019 » How to generate dbSNP153(hg19) from dbSNP153(hg38,GRCH38)

February

• February 28, 2019 » Recessive Diplotype Identify Novel Hemochromatosis Gene

2018

October

• October 1, 2018 » Next generation protocol to bcftools in medical genetics research

February

• February 27, 2018 » How to prepare a computational biology work station in MCRI

2017

October

• October 11, 2017 » How to apply deeptools for Medip-seq and MBD-seq analysis

September

• September 30, 2017 » Genome-wide multiple bedgraph data analysis with Intervene

August

• August 1, 2017 » How to update hapmap2 and hapmap3 from hg18 to hg19 or hg38

June

• June 28, 2017 » Characterizing population with principle componment analysis
• June 13, 2017 » Data Science in Population Genetics and Medical Genetics
• June 10, 2017 » Geneics and epigeneitcs of rheumatoid arthritis and osteoarthritis
• June 9, 2017 » Genetics and epigenetics of pancreatic and cholangiocarcinoma

May

• May 28, 2017 » Genetic and epigenetic of esophageal squamous cell carcinoma
• May 2, 2017 » Advances in Genetic and epigenetic of Hepatocellular Carcinoma
• May 1, 2017 » How to apply R to prepare fancy figures in the manuscript

April

• April 23, 2017 » Explaining complex machine learning models with LIME
• April 9, 2017 » How to apply R for Plotting 3D maps and location tracks
• April 3, 2017 » Science Writing: Guidelines And Guidance in Medical Research
• April 2, 2017 » Dealing with unbalanced data in machine learning

March

• March 31, 2017 » Building meaningful machine learning models for disease prediction
• March 16, 2017 » Plotting trees from Random Forest models with ggraph
• March 7, 2017 » Hyper-parameter Tuning with Grid Search for Deep Learning

February

• February 27, 2017 » Building deep neural nets with h2o and rsparkling that predict arrhythmia of the heart
• February 19, 2017 » Predicting food preferences with sparklyr (machine learning)
• February 12, 2017 » Conditional ggplot2 geoms in functions (QTL plots)
• February 6, 2017 » Scratching the Surface of Gender Biases

January

• January 30, 2017 » New features in World Gender Statistics app
• January 29, 2017 » Exploring World Gender Statistics with Shiny
• January 22, 2017 » R vs Python - a One-on-One Comparison
• January 15, 2017 » Feature Selection in Machine Learning (Breast Cancer Datasets)
• January 5, 2017 » Gene homology Part 3 - Visualizing Gene Ontology of Conserved Genes

2016

December

• December 30, 2016 » How to map your Google location history with R
• December 22, 2016 » Animating Plots of Beer Ingredients and Sin Taxes over Time
• December 18, 2016 » How to build a Shiny app for disease- & trait-associated locations of the human genome
• December 14, 2016 » Gene homology Part 2 - creating directed networks with igraph
• December 11, 2016 » Creating a network of human gene homology with R and D3
• December 4, 2016 » How to set up your own R blog with Github pages and Jekyll Bootstrap
• December 2, 2016 » Extreme Gradient Boosting and Preprocessing in Machine Learning - Addendum to predicting flu outcome with R

November

• November 27, 2016 » Can we predict flu deaths with Machine Learning and R?
• November 20, 2016 » Analysing the Gilmore Girls' coffee addiction with R
• November 13, 2016 » Creating a Gilmore Girls character network with R
• November 6, 2016 » Is 'Yeah' Josh and Chuck's favorite word?
• November 1, 2016 » Exploring the human genome (Part 2) - Transcripts

October

• October 23, 2016 » Exploring the human genome - Gene Annotations
• October 16, 2016 » USA/ Canada Roadtrip 2016

September

• September 29, 2016 » DESeq2 Course Work
• September 28, 2016 » exprAnalysis package

1945

January

• January 8, 1945 » Gene ID Transfer with R between Symbol, Gene ID and KEGG ID

1944

January

• January 8, 1944 » Human Population Genetics and related data operation

1943

January

• January 8, 1943 » How to set up github and use it to accelerate your research

1942

January

• January 8, 1942 » Environment Setting in All My Previous Working Station

1941

January

• January 8, 1941 » How to Install HTseq in Linux and STAR for RNA-seq

1940

January

• January 8, 1940 » How to apply MACS2 to identify methylation peaks with MBD-seq

1939

January

• January 8, 1939 » DNA methylation and Epigenetic research in Human Population

1938

February

• February 28, 1938 » Multi-Omics of Characterization of the Cancer Cell Line Encyclopedia

1937

February

• February 28, 1937 » Dac Demethylation

1936

February

• February 28, 1936 » Riblast_ncrna_target

1934

February

• February 28, 1934 » Most Important Database for Human Biomedical Research

1933

February

• February 28, 1933 » How to get genomic coordinates for all protein domains

1931

February

• February 28, 1931 » How to Understand Human Cancer

1930

February

• February 28, 1930 » How to Submit NGS Seqeuencing data to SRA

1929

February

• February 28, 1929 » Resources for flow cytometry bioinformatics analysis

1928

February

• February 28, 1928 » How to use plink1.9/plink2 to do human genetics research
• February 28, 1928 » RNA-seq data to reveal novel response mechanism to bacterial
• February 28, 1928 » RNA-seq data with metaphlan2 to reveal novel response mechanism to bacterial

1926

February

• February 28, 1926 » EAS and SAS data in GenomeAsia100K panel

1925

February

• February 28, 1925 » Genomics, Genomics and Related Disciplines

1924

February

• February 28, 1924 » How to reformat GeneSky GSA report to Plink

1923

February

• February 28, 1923 » How to merge 7000 VCF files with bcftools merge?

1922

February

• February 28, 1922 » Automatic GWAS and Post-GWAS Analysis Pipeline

1921

February

• February 28, 1921 » How to install ANNOVAR in DeepThought@UW-Madison

1920

February

• February 28, 1920 » How to Prepare Annotation DB Folder for Bioinformatics Analysis

1919

February

• February 28, 1919 » How to Prepare China and USA Map with R

1918

February

• February 28, 1918 » FDA and drug development pipeline

1917

February

• February 28, 1917 » How to Install Ensembl Variant Effect Predictor

1916

February

• February 28, 1916 » FDA approved drugs and the mechanism

1915

February

• February 28, 1915 » Bioinformatics Skills Required