11 October 2017

deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. deeptools has been widely applied in bam/bigwig data analysis. here, I show some example how to use deeptools in mbd-seq and medip-seq methylation data analysis. Meanwhile, MACS usage will also be shown in this poster.

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