Categories
- bioinformatics 30
- research 20
- RNA-seq 2
- microarray 1
- DESeq2 1
- teaching 1
- maps 3
- gpx 1
- genome 6
- text_analysis 4
- machine_learning 10
- blogging 1
- animation 1
- r_vs_python 1
- shiny 3
- ggplot2 1
- writting 1
- Genetics 2
- flexdashboard 3
- tutorials 1
bioinformatics
- How to generate dbSNP153(hg19) from dbSNP153(hg38,GRCH38)
- Next generation protocol to bcftools in medical genetics research
- How to prepare a computational biology work station in MCRI
- How to apply deeptools for Medip-seq and MBD-seq analysis
- Genome-wide multiple bedgraph data analysis with Intervene
- How to update hapmap2 and hapmap3 from hg18 to hg19 or hg38
- Genetics and epigenetics of pancreatic and cholangiocarcinoma
- Genetic and epigenetic of esophageal squamous cell carcinoma
- Advances in Genetic and epigenetic of Hepatocellular Carcinoma
- How to apply R to prepare fancy figures in the manuscript
- Most Important Database for Human Biomedical Research
- How to get genomic coordinates for all protein domains
- How to Understand Human Cancer
- How to Submit NGS Seqeuencing data to SRA
- Resources for flow cytometry bioinformatics analysis
- How to use plink1.9/plink2 to do human genetics research
- RNA-seq data to reveal novel response mechanism to bacterial
- RNA-seq data with metaphlan2 to reveal novel response mechanism to bacterial
- EAS and SAS data in GenomeAsia100K panel
- Genomics, Genomics and Related Disciplines
- How to reformat GeneSky GSA report to Plink
- How to merge 7000 VCF files with bcftools merge?
- Automatic GWAS and Post-GWAS Analysis Pipeline
- How to install ANNOVAR in DeepThought@UW-Madison
- How to Prepare Annotation DB Folder for Bioinformatics Analysis
- How to Prepare China and USA Map with R
- FDA and drug development pipeline
- How to Install Ensembl Variant Effect Predictor
- FDA approved drugs and the mechanism
- Bioinformatics Skills Required
research
- Novel 2019 coronavirus genome in Wuhan, China and USA
- Robust Region-Based Rare-Variant Test to UKBB-Seq Data
- Genome-wide DNA methylation to human atrial fibrillation
- Genome-wide bisulfite sequencing to human tissue samples
- Epigenome Research to Human Cancers with WGBS
- Genomics, Environment Interaction, Epigenetics and Aging
- Population Genetics in East Asian and Allele Frequency
- Genetic and Epigenetic based Intra-Tumor Heterogeneity
- Electronic health/medical records (EHR/EMR) data analysis
- US-FDA Artificial Intelligence and Machine Learning Discussion
- Artificial intelligence in risk prediction and diseases diagnosis
- How to design and conduct a biomedical research in MCRI
- Gene ID Transfer with R between Symbol, Gene ID and KEGG ID
- Human Population Genetics and related data operation
- How to set up github and use it to accelerate your research
- Environment Setting in All My Previous Working Station
- How to Install HTseq in Linux and STAR for RNA-seq
- How to apply MACS2 to identify methylation peaks with MBD-seq
- DNA methylation and Epigenetic research in Human Population
- Multi-Omics of Characterization of the Cancer Cell Line Encyclopedia
RNA-seq
microarray
DESeq2
teaching
maps
- How to apply R for Plotting 3D maps and location tracks
- How to map your Google location history with R
- USA/ Canada Roadtrip 2016
gpx
genome
- Gene homology Part 3 - Visualizing Gene Ontology of Conserved Genes
- How to build a Shiny app for disease- & trait-associated locations of the human genome
- Gene homology Part 2 - creating directed networks with igraph
- Creating a network of human gene homology with R and D3
- Exploring the human genome (Part 2) - Transcripts
- Exploring the human genome - Gene Annotations
text_analysis
- Characterizing population with principle componment analysis
- Analysing the Gilmore Girls' coffee addiction with R
- Creating a Gilmore Girls character network with R
- Is 'Yeah' Josh and Chuck's favorite word?
machine_learning
- Explaining complex machine learning models with LIME
- Dealing with unbalanced data in machine learning
- Building meaningful machine learning models for disease prediction
- Plotting trees from Random Forest models with ggraph
- Hyper-parameter Tuning with Grid Search for Deep Learning
- Building deep neural nets with h2o and rsparkling that predict arrhythmia of the heart
- Predicting food preferences with sparklyr (machine learning)
- Feature Selection in Machine Learning (Breast Cancer Datasets)
- Extreme Gradient Boosting and Preprocessing in Machine Learning - Addendum to predicting flu outcome with R
- Can we predict flu deaths with Machine Learning and R?
blogging
animation
r_vs_python
shiny
- Scratching the Surface of Gender Biases
- New features in World Gender Statistics app
- Exploring World Gender Statistics with Shiny
ggplot2
writting
Genetics
- Data Science in Population Genetics and Medical Genetics
- Geneics and epigeneitcs of rheumatoid arthritis and osteoarthritis
flexdashboard
- Genome-wide cell-free DNA fragmentation in patients with cancer
- (5R)-5-Hydroxytriptolide and Epigenetics of Rheumatoid Arthritis
- Recessive Diplotype Identify Novel Hemochromatosis Gene